| University | Category | Training course/program | Website |
| Hokkaido University | Master | Medical Physics Education Program | https://www.med.hokudai.ac.jp/en/ |
| PhD | Graduate School of Medicine | |
| PhD | Graduate School of Biomedical Science and Engineering | https://www.med.hokudai.ac.jp/en/ |
| Tohoku University | Master | Medical Physics Course, Graduate School of Medicine | https://www.rt-medphys.med.tohoku.ac.jp/en/ |
| PhD | Medical Physics Course, Graduate School of Medicine | https://www.rt-medphys.med.tohoku.ac.jp/en/ |
| Niigata University | Master | Master’s Program in Medical Physics | |
| PhD | Doctoral Program in Medical Physics | |
| Niigata University Medical and Dental Hospital | Residency | Medical Physics Residency Program | |
| Gunma University | Master | Medical Physics and Biology for Heavy Ion Therapy | https://heavy-ion.showa.gunma-u.ac.jp/lab/en/ |
| Master | Program for Cultivating Global Leaders in Heavy Ion Radiotherapy | https://lphd.dept.showa.gunma-u.ac.jp/en/?page_id=1649 |
| Gunma Prefectural College of Health Sciences | Master | | https://www.gchs.ac.jp/en/ |
| University of Tsukuba | Master | Master’s Program in Medical Sciences | https://www.md.tsukuba.ac.jp/FrontierSite/en/major/medical_physics.html |
| PhD | Training Program for Experts in Medical Physics | https://www.md.tsukuba.ac.jp/FrontierSite/en/major/medical_physics.html |
| Residency | Training Program for Experts in Medical Physics | |
| Ibaraki Prefectural University of Health Sciences | Master | Medical Physics Course | https://www-ipu-ac-jp.translate.goog/?_x_tr_sl=ja&_x_tr_tl=en&_x_tr_hl=ja&_x_tr_pto=wapp |
| Teikyo University | Master | Division of Clinical Radiology, Medical Physics Course (Master’s Degree Program), Graduate School of Medical Care and Technology | https://www.teikyo-u.ac.jp/en/faculties/medicine_tech/radiation |
| PhD | Division of Clinical Radiology, Medical Physics Course (Doctoral Degree Program) , Graduate School of Medical Care and Technology | http://www.teikyo-u.ac.jp/english/index.html |
| Tokyo Metropolitan University | Master | Medical Physics Course in Master’s Program, Department of Radiological Sciences, Graduate School of Human Health Sciences | https://www.tmu.ac.jp/english/index.html |
| PhD | Medical Physics Course in Doctral Program, Department of Radiological Sciences, Graduate School of Human Health Sciences | https://www.tmu.ac.jp/english/index.html |
| Rikkyo University | Master | Medical Physics Sub-Major Program, Graduate School of Science | |
| PhD | Medical Physics Sub-Major Program, Graduate School of Science | |
| The University of Tokyo | PhD | Medical Physics Course | |
| Juntendo University | Master | Department of Radiation Oncology, Medical Physics Graduate Program, Graduate School of Medicine | https://en.juntendo.ac.jp/ |
| PhD | Medical Physics Graduate Program, Department of Radiation Oncology, Graduate School of Medicine | https://en.juntendo.ac.jp/ |
| Tokyo Women’s Medical University | PhD | Graduate School of Medicine | https://www.twmu.ac.jp/english/ |
| International University of Heath and Welfare | Master | Graduate School of Health and Welfare Sciences,Department of Radiological Sciences | https://www.iuhw.ac.jp/ms-phd/ |
| National Cancer Center | Residency | | https://www.ncc.go.jp/en/ncch/index.html |
| Komazawa University | Master | Graduate Division of Health Scineces | https://www.komazawa-u.ac.jp/english/ |
| Showa University | Master | Graduate School of Health Sciences | https://www.showa-u.ac.jp/en/ |
| Kitasato University | Master | Medical Physics Course (Radiation Oncology) | https://www.kitasato-u.ac.jp/en/kugsms/ |
| Tokai University | Master | Department of Radiation Oncology, School of Medicine | |
| Kanazawa University | PhD | Division of Health Sciences, Graduate School of Medical Sciences | |
| Fujita Health University | Master | | https://www.fujita-hu.ac.jp/en/ |
| Kyoto University | Master | Medical physicist training program | |
| PhD | Medical physicist training program | |
| Osaka University | Master | Graduate School of Medicine, Advanced Medical Physics Course I/II | https://sahswww.med.osaka-u.ac.jp/en/ |
| PhD | Graduate School of Medicine Department of Radiation Oncology | |
| PhD | Graduate School of Medicine, Division of Health Sciences | https://sahswww.med.osaka-u.ac.jp/en/ |
| Kinki University | PhD | Department of Medical Physics | https://www.med.kindai.ac.jp/radio/english.html |
| Kobe University | Master | Graduate School of Medicine, Training course for Radiation Physicist | https://www.med.kobe-u.ac.jp/en/index.html |
| Hiroshima University | Master | Medical Physics Course | |
| PhD | Biomedical Sciences Major, Graduate School of Biomedical & Health Sciences | https://www.hiroshima-u.ac.jp/en/bhs |
| Tokushima University | Mater | Graduate School of Health Sciences, Course of Medical Physics | http://www.tokushima-u.ac.jp/english/department/graduate_school/health_sciences.html |
| Kyushu University | Master | Education Program on Medical Physicists and Radiotherapy Quality Managers (Master’s course) | https://web.shs.kyushu-u.ac.jp/~mp/ |
| Teikyo University | Master | Graduate School of Health Sciences, Division of Radiological Sciences, | https://www.teikyo-u.ac.jp/en/faculties/health_sciences/radiological_sciences |